Downloading test datasetsΒΆ

Test datasets for hictk are hosted on Zenodo: doi.org/10.5281/zenodo.8121686

After downloading the data, move to a folder with at least ~1 GB of free space and extract the test datasets:

user@dev:/tmp$ mkdir data/
user@dev:/tmp$ tar -xf hictk_test_data.tar.zst         \
                   -C data --strip-components=3        \
                   test/data/hic/4DNFIZ1ZVXC8.hic9     \
                   test/data/cooler/4DNFIZ1ZVXC8.mcool \
                   test/data/interactions/4DNFIKNWM36K.subset.pairs.xz

user@dev:/tmp$ ls -lah data
total 261M
drwx------  2 dev dev   80 Sep 29 17:00 .
drwxrwxrwt 26 dev dev  960 Sep 29 17:00 ..
-rw-------  1 dev dev 125M Jun 26  2023 4DNFIKNWM36K.subset.pairs.xz
-rw-------  1 dev dev 128M Jun  8  2023 4DNFIZ1ZVXC8.hic9
-rw-------  1 dev dev 133M Jul  7  2023 4DNFIZ1ZVXC8.mcool