Downloading test datasets#

Test dataset for hictk are hosted on Zenodo: doi.org/10.5281/zenodo.8121686

After downloading the data, move to a folder with at least ~1 GB of free space and extract the test datasets:

user@dev:/tmp$ mkdir data/
user@dev:/tmp$ tar -xf hictk_test_data.tar.xz                     \
                   -C data --strip-components=3                   \
                   test/data/hic/4DNFIZ1ZVXC8.hic9                \
                   test/data/integration_tests/4DNFIZ1ZVXC8.mcool \
                   test/data/integration_tests/4DNFIKNWM36K.subset.pairs.xz

user@dev:/tmp$ ls -lah data
total 261M
drwx------  2 dev dev   80 Sep 29 17:00 .
drwxrwxrwt 26 dev dev  960 Sep 29 17:00 ..
-rw-------  1 dev dev 128M Jun  8 19:42 4DNFIZ1ZVXC8.hic9
-rw-------  1 dev dev 133M Jul  7 16:29 4DNFIZ1ZVXC8.mcool